rs108225620 SNP Detail

Summary

• ID
  rs108225620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47867230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGAAAAA TACAAAACAA
  ACAAACAAAC AAACAAATAA ATAAATAAAT AAATAAATAA AATATCTAGA AAATAGAAGG
  AGGTCTGCTG AGACTGATCA GGAGTTAACA AGCACTTGTC GTGAAAACCA GACAGTCTTA
  GCTCAAATGT CAGAACTCAC ATGGAGGAAG AAGAGAATCA ACCCTACAGT ATTGTCTTCT
  R
  ACCTGCTCTC TGTGGTTCAT ACAGGCTGGA CACACACACA GTTTTGTTTT GTTTTGTTTT
  GTTTTGTTTT GTTTTTTTCT GAGACAGGGT TTTCTCTGTG TTGCCCTGTC TGTCCTGGAA
  CTCTCTCTGT AGACCAGGCT GGCTTGGCAT TTCAGAGATC TGCCTGCTTC TGCCTCCTGA
  GAGCTGGGAT TAAAGGCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398349292	MGP_WTSI_17_47693254	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	G	A	G	G	G	A	A	A	G	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108225620					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	G	A	G	G	G	A	A	A	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398349292	MGP_WTSI_17_47693254	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47867230 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Rr335190	regulatory region 335190	1430 bp distal
Rr335191	regulatory region 335191	830 bp distal
Rr335192	regulatory region 335192	230 bp distal
Rr335193	regulatory region 335193	within coordinates
Tssr144956	transcription start site region 144956	1214 bp upstream
Tssr144957	transcription start site region 144957	1299 bp upstream
Tssr144958	transcription start site region 144958	1395 bp upstream
Tssr144959	transcription start site region 144959	1412 bp upstream
Tssr144960	transcription start site region 144960	1482 bp upstream
Tssr144961	transcription start site region 144961	1523 bp upstream
Tssr144962	transcription start site region 144962	1541 bp upstream
Tssr144963	transcription start site region 144963	1602 bp upstream