rs108226663 SNP Detail

Summary

• ID
  rs108226663
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:34418812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGGTTTTAT CATCTCATTT GTTCAGCCCC
  TCCCCCGTCC CCACCATGTC CCAGGTCACT TACACCCCCA TCGGGTGATC CATTTTAGCA
  ACCATAAGGG atatatatat atatatatat atatatatat atatatatat atatatatat
  M
  TCCTTCATGT GATTAAAAAT CTCCCAAATC CTAGCCTGGG TCCCTGCTTA TAAACCAGAT
  AATCTGGCAG TCACTTAACC TGCAGGGTGG TATCATTTAC TAGGCTTTTA AAATGCGGAT
  CAGAGATTTT AAATTCCCAA ACTCTCCTTT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325370670	CHEV_17_34336783	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108226663					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:34418812 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9033	CpG island 9033	1950 bp distal
Cpgi9034	CpG island 9034	1055 bp distal
D17Mit1001	DNA segment, Chr 17, Massachusetts Institute of Technology 1001	within coordinates
Gm20496	predicted gene 20496	within coordinates
Psmb8	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	within coordinates
Tssr143931	transcription start site region 143931	1632 bp downstream
Tssr143932	transcription start site region 143932	1454 bp downstream
Tssr143933	transcription start site region 143933	1438 bp downstream
Tssr143934	transcription start site region 143934	1218 bp downstream
Tssr143935	transcription start site region 143935	869 bp upstream
Tssr143936	transcription start site region 143936	1023 bp upstream
Tssr147541	transcription start site region 147541	1599 bp downstream