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rs108227979 SNP Detail
Summary
  • ID
    rs108227979
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr17:84493664 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAGTAGGCGG CGGCGGCCGC
    GGCGGCGAAG TTGTGGGTCT GGATGGCGAG CGGCGTGATG AGGCTGCTCA GCTCCGGGCC
    GAAAGCGAAG GCGTTGTTAG CGCCGGAGGA CGAGCAGGAG GCGCACGGCG CTCCGGGGCT
    CAGCAGGTCC TCCGCGCCCC CGGGGCCGTA GAGCAGCGCG GCCGCCGCCG CCGTGGCGCA
    R
    CACGTCGGGG CGCCCGAGGG CGTGGAGGCC GCCGAGGCGG AAGAGCAGGA AGAAGCCGAG
    GAGGAACAGG ACGAGGCCGA GGAGGAGGGC GGCGGCGGCG TGCGCGATGT GGGGCTGTCG
    AGCAGCAGCG GCGACTCCAG GCCCCCCGGC GGCTGGTGGT GGCCCGACGG GAAGCCGGAG
    AAACTGAGGC TGTGATGCAG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss131326217 NCBIM37_NT_039649_chr17_84585576 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs108227979 SNP G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss131326217 NCBIM37_NT_039649_chr17_84585576 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:84493664 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9565 CpG island 9565 within coordinates
Cpgi9566 CpG island 9566 1375 bp proximal
Gm56881 predicted gene, 56881 1911 bp upstream
Rr340271 regulatory region 340271 within coordinates
Rr405496 regulatory region 405496 1637 bp upstream
Tssr146044 transcription start site region 146044 475 bp downstream
Tssr146045 transcription start site region 146045 854 bp upstream
Tssr149650 transcription start site region 149650 649 bp upstream
Tssr149651 transcription start site region 149651 595 bp upstream
Tssr149652 transcription start site region 149652 215 bp upstream
Tssr149653 transcription start site region 149653 163 bp upstream
Tssr149654 transcription start site region 149654 39 bp upstream
Tssr149655 transcription start site region 149655 35 bp downstream
Tssr149656 transcription start site region 149656 125 bp downstream
Tssr149657 transcription start site region 149657 341 bp downstream
Tssr149658 transcription start site region 149658 398 bp downstream
Tssr149659 transcription start site region 149659 433 bp downstream
Tssr149660 transcription start site region 149660 464 bp downstream
Tssr149661 transcription start site region 149661 513 bp downstream
Tssr149662 transcription start site region 149662 572 bp downstream
Tssr149663 transcription start site region 149663 636 bp downstream
Tssr149664 transcription start site region 149664 677 bp downstream
Tssr149665 transcription start site region 149665 722 bp downstream
Tssr149666 transcription start site region 149666 791 bp downstream
Tssr149667 transcription start site region 149667 880 bp downstream
Tssr149668 transcription start site region 149668 935 bp downstream
Tssr149669 transcription start site region 149669 968 bp downstream
Tssr149670 transcription start site region 149670 1501 bp downstream
Tssr149671 transcription start site region 149671 1591 bp downstream
Tssr149672 transcription start site region 149672 1703 bp downstream
Zfp36l2 zinc finger protein 36, C3H type-like 2 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory