rs108227979 SNP Detail

Summary

• ID
  rs108227979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84493664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTAGGCGG CGGCGGCCGC
  GGCGGCGAAG TTGTGGGTCT GGATGGCGAG CGGCGTGATG AGGCTGCTCA GCTCCGGGCC
  GAAAGCGAAG GCGTTGTTAG CGCCGGAGGA CGAGCAGGAG GCGCACGGCG CTCCGGGGCT
  CAGCAGGTCC TCCGCGCCCC CGGGGCCGTA GAGCAGCGCG GCCGCCGCCG CCGTGGCGCA
  R
  CACGTCGGGG CGCCCGAGGG CGTGGAGGCC GCCGAGGCGG AAGAGCAGGA AGAAGCCGAG
  GAGGAACAGG ACGAGGCCGA GGAGGAGGGC GGCGGCGGCG TGCGCGATGT GGGGCTGTCG
  AGCAGCAGCG GCGACTCCAG GCCCCCCGGC GGCTGGTGGT GGCCCGACGG GAAGCCGGAG
  AAACTGAGGC TGTGATGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss131326217	NCBIM37_NT_039649_chr17_84585576	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108227979					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss131326217	NCBIM37_NT_039649_chr17_84585576	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84493664 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	within coordinates
Cpgi9566	CpG island 9566	1375 bp proximal
Gm56881	predicted gene, 56881	1911 bp upstream
Rr340271	regulatory region 340271	within coordinates
Rr405496	regulatory region 405496	1637 bp upstream
Tssr146044	transcription start site region 146044	475 bp downstream
Tssr146045	transcription start site region 146045	854 bp upstream
Tssr149650	transcription start site region 149650	649 bp upstream
Tssr149651	transcription start site region 149651	595 bp upstream
Tssr149652	transcription start site region 149652	215 bp upstream
Tssr149653	transcription start site region 149653	163 bp upstream
Tssr149654	transcription start site region 149654	39 bp upstream
Tssr149655	transcription start site region 149655	35 bp downstream
Tssr149656	transcription start site region 149656	125 bp downstream
Tssr149657	transcription start site region 149657	341 bp downstream
Tssr149658	transcription start site region 149658	398 bp downstream
Tssr149659	transcription start site region 149659	433 bp downstream
Tssr149660	transcription start site region 149660	464 bp downstream
Tssr149661	transcription start site region 149661	513 bp downstream
Tssr149662	transcription start site region 149662	572 bp downstream
Tssr149663	transcription start site region 149663	636 bp downstream
Tssr149664	transcription start site region 149664	677 bp downstream
Tssr149665	transcription start site region 149665	722 bp downstream
Tssr149666	transcription start site region 149666	791 bp downstream
Tssr149667	transcription start site region 149667	880 bp downstream
Tssr149668	transcription start site region 149668	935 bp downstream
Tssr149669	transcription start site region 149669	968 bp downstream
Tssr149670	transcription start site region 149670	1501 bp downstream
Tssr149671	transcription start site region 149671	1591 bp downstream
Tssr149672	transcription start site region 149672	1703 bp downstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	within coordinates