rs108228066 SNP Detail

Summary

• ID
  rs108228066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44129738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCA TCTCCTCTTT CTCCAACTTC
  Y
  TGTCCTGTCT GCCTCTCTTC TTCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss149112895	ENSMUSSNP5127129	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss322198942	CHEV_7_51735684	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs108228066					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44129738 () rs orientation: forward

Symbol	Name	Function Class
Tssr2227	transcription start site region 2227	1294 bp downstream
Tssr2228	transcription start site region 2228	231 bp downstream
Tssr2229	transcription start site region 2229	40 bp upstream
Tssr2230	transcription start site region 2230	219 bp upstream
Tssr2231	transcription start site region 2231	352 bp upstream
Tssr2232	transcription start site region 2232	527 bp upstream
Tssr2233	transcription start site region 2233	560 bp upstream
Tssr2234	transcription start site region 2234	719 bp upstream
Tssr2235	transcription start site region 2235	1353 bp upstream
Tssr66272	transcription start site region 66272	1959 bp downstream
Tssr66273	transcription start site region 66273	1941 bp downstream
Tssr66274	transcription start site region 66274	1936 bp downstream
Tssr66275	transcription start site region 66275	1916 bp downstream
Tssr66276	transcription start site region 66276	1896 bp downstream
Tssr66277	transcription start site region 66277	1876 bp downstream
Tssr66278	transcription start site region 66278	1832 bp downstream
Tssr66279	transcription start site region 66279	1787 bp downstream
Tssr66280	transcription start site region 66280	1765 bp downstream
Tssr66281	transcription start site region 66281	1725 bp downstream
Tssr66282	transcription start site region 66282	1708 bp downstream
Tssr66283	transcription start site region 66283	1694 bp downstream
Tssr66284	transcription start site region 66284	1682 bp downstream
Tssr66285	transcription start site region 66285	1668 bp downstream
Tssr66286	transcription start site region 66286	1629 bp downstream
Tssr66287	transcription start site region 66287	1593 bp downstream
Tssr66288	transcription start site region 66288	1568 bp downstream
Tssr66289	transcription start site region 66289	1486 bp downstream
Tssr66290	transcription start site region 66290	1448 bp downstream
Tssr66291	transcription start site region 66291	1422 bp downstream
Tssr66292	transcription start site region 66292	1390 bp downstream
Tssr66293	transcription start site region 66293	1368 bp downstream
Tssr66294	transcription start site region 66294	1344 bp downstream
Tssr66295	transcription start site region 66295	1079 bp downstream
Tssr66296	transcription start site region 66296	908 bp downstream
Tssr66297	transcription start site region 66297	884 bp downstream
Tssr66298	transcription start site region 66298	829 bp downstream
Tssr66299	transcription start site region 66299	809 bp downstream
Tssr66300	transcription start site region 66300	786 bp downstream
Tssr66301	transcription start site region 66301	770 bp downstream
Tssr66302	transcription start site region 66302	729 bp downstream
Tssr66303	transcription start site region 66303	720 bp downstream
Tssr66304	transcription start site region 66304	715 bp downstream
Tssr66305	transcription start site region 66305	676 bp downstream
Tssr66306	transcription start site region 66306	622 bp downstream
Tssr66307	transcription start site region 66307	573 bp downstream
Tssr66308	transcription start site region 66308	556 bp downstream
Tssr66309	transcription start site region 66309	506 bp downstream
Tssr66310	transcription start site region 66310	437 bp downstream
Tssr66311	transcription start site region 66311	414 bp downstream
Tssr66312	transcription start site region 66312	395 bp downstream
Tssr66313	transcription start site region 66313	385 bp downstream
Tssr66314	transcription start site region 66314	367 bp downstream
Tssr66315	transcription start site region 66315	360 bp downstream
Tssr66316	transcription start site region 66316	295 bp downstream
Tssr66317	transcription start site region 66317	279 bp downstream
Tssr66318	transcription start site region 66318	238 bp downstream
Tssr66319	transcription start site region 66319	210 bp downstream
Tssr66320	transcription start site region 66320	186 bp downstream
Tssr66321	transcription start site region 66321	162 bp downstream
Tssr66322	transcription start site region 66322	146 bp downstream
Tssr66323	transcription start site region 66323	108 bp downstream
Tssr66324	transcription start site region 66324	55 bp downstream
Tssr66325	transcription start site region 66325	14 bp downstream
Tssr66326	transcription start site region 66326	4 bp downstream
Tssr66327	transcription start site region 66327	1 bp upstream
Tssr66328	transcription start site region 66328	17 bp upstream
Tssr66329	transcription start site region 66329	56 bp upstream
Tssr66330	transcription start site region 66330	75 bp upstream
Tssr66331	transcription start site region 66331	89 bp upstream
Tssr66332	transcription start site region 66332	110 bp upstream
Tssr66333	transcription start site region 66333	158 bp upstream
Tssr66334	transcription start site region 66334	170 bp upstream
Tssr66335	transcription start site region 66335	179 bp upstream
Tssr66336	transcription start site region 66336	188 bp upstream
Tssr66337	transcription start site region 66337	206 bp upstream
Tssr66338	transcription start site region 66338	262 bp upstream
Tssr66339	transcription start site region 66339	313 bp upstream
Tssr66340	transcription start site region 66340	358 bp upstream
Tssr66341	transcription start site region 66341	403 bp upstream
Tssr66342	transcription start site region 66342	465 bp upstream
Tssr66343	transcription start site region 66343	497 bp upstream
Tssr66344	transcription start site region 66344	642 bp upstream
Tssr66345	transcription start site region 66345	675 bp upstream
Tssr66346	transcription start site region 66346	731 bp upstream
Tssr66347	transcription start site region 66347	769 bp upstream
Tssr66348	transcription start site region 66348	810 bp upstream
Tssr66349	transcription start site region 66349	834 bp upstream
Tssr66350	transcription start site region 66350	862 bp upstream
Tssr66351	transcription start site region 66351	870 bp upstream
Tssr66352	transcription start site region 66352	906 bp upstream
Tssr66353	transcription start site region 66353	980 bp upstream
Tssr66354	transcription start site region 66354	994 bp upstream
Tssr66355	transcription start site region 66355	1021 bp upstream
Tssr66356	transcription start site region 66356	1038 bp upstream
Tssr66357	transcription start site region 66357	1052 bp upstream
Tssr66358	transcription start site region 66358	1064 bp upstream
Tssr66359	transcription start site region 66359	1090 bp upstream
Tssr66360	transcription start site region 66360	1102 bp upstream
Tssr66361	transcription start site region 66361	1128 bp upstream
Tssr66362	transcription start site region 66362	1160 bp upstream
Tssr66363	transcription start site region 66363	1177 bp upstream
Tssr66364	transcription start site region 66364	1210 bp upstream
Tssr66365	transcription start site region 66365	1230 bp upstream
Tssr66366	transcription start site region 66366	1250 bp upstream
Tssr66367	transcription start site region 66367	1278 bp upstream
Tssr66368	transcription start site region 66368	1300 bp upstream
Tssr66369	transcription start site region 66369	1334 bp upstream
Tssr66370	transcription start site region 66370	1376 bp upstream
Tssr66371	transcription start site region 66371	1801 bp upstream
Tssr66372	transcription start site region 66372	1964 bp upstream
Tssr72200	transcription start site region 72200	1873 bp upstream
Tssr72201	transcription start site region 72201	1363 bp upstream
Tssr72202	transcription start site region 72202	506 bp upstream
Tssr72203	transcription start site region 72203	126 bp upstream
Tssr72204	transcription start site region 72204	461 bp downstream