rs108229337 SNP Detail

Summary

• ID
  rs108229337
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:132656064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAGATTT GTTATTATAT
  CTAAGTACAC TGTAGCTGTC TTCAGACACA CCAGTAGAGG GTGTCAGATC TCATTACGGA
  TGGTTGTGAG CCACCATGTG GTTGCTGGGA CTTGAACTCA GGACCTTCGG AAGAGCAATC
  AATGCTCTTA ACCACCGAGC CATCTCTCCA GCCCGGCAAG ATCTCTCTTG TTCACTGTTA
  Y
  ATATGTCAGG CAAGCAGTCT CAAACTTCTA TAGAGTCTCC TGTGTGTGCC TCCATCCTGC
  TGTAAGAACG CTGGGATTAC AGATATGTAC CATAGCACCT CATGCTTATG TGGTTAAGAG
  CTCTACCCTT TGAGTCATCT CCCCTCATTC ATCAAATGCC ACTTGAACTA CATGTCCTCT
  GGAGGTGCTC CTGACTCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147622994	ENSMUSSNP6223105	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320509803	CHEV_2_132639880	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108229337					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132656064 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12310	CpG island 12310			1482 bp proximal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor			1997 bp upstream
Rr397334	regulatory region 397334			1794 bp upstream
Rr565537	regulatory region 565537			1900 bp proximal
Trmt6	tRNA methyltransferase 6			Intron
				Noncoding-Transcript-Variant
Tssr20335	transcription start site region 20335			1993 bp upstream
Tssr26490	transcription start site region 26490			1834 bp downstream