rs108229365 SNP Detail

Summary

• ID
  rs108229365
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:118983934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TGCTATGAAA GTGGCCCACC GGCTGAGCCA CACCCCAGCC
  TTAATCTCCT TTATTATTTT TTGTTTGGTT GGTTTTTTGT TTGGTCGAGA CAAGGTCCCA
  C
  TATGTAGCCT TGGCTAGCCT AGAACTCGAT ATATAGACCA CACTTGCCTT GAACTCACAG
  AGCTCTGCCT GCCTCTACTT CTTGAGTGCT GGGATGAAAA G                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132903298	ENSMUSSNP1209180	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108229365					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:118983934 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4257	CpG island 4257	1616 bp distal
Gm39482	predicted gene, 39482	33 bp upstream
Gm73852	predicted gene, 73852	1287 bp upstream
Rr461240	regulatory region 461240	1879 bp distal
Rr461241	regulatory region 461241	1298 bp distal
Rr461242	regulatory region 461242	1127 bp distal
Rr461243	regulatory region 461243	469 bp distal