rs108230402 SNP Detail

Summary

• ID
  rs108230402
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136390250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGAGCG TTTGGAGCGT
  GGCAGACCCT GTTGCTTTAG TAGACGACAG CTCCTTGGAG AGCCAGGCTT TCTACTCCTA
  GAAGGGCTTT CTTTGCATTA GGTGTGTGTT TCCTCTTATC CTGTCCACCA CTCTCCTGGT
  GGCTTGGGGG CCTCTGCCCT TACAGAGAAG AAGTTCGTAT TGGTCTGCGA AGACTTTCCC
  R
  AGTCCAGACT CAGTTCCCTT TGAACAGATG GGCTGTGTGC TCCATGGCTT TGCCCCTTTT
  CAGTTTTGTT TGCAGCTCCT CTTGACCAAG TCCTGCATGT TCATGTTCTT ATATCTCTGT
  GCTCAGCCCT CCAGGCTGTC TTGCTTCCTT CAAGTCATCG CTGATGACTG CTTGTAGACG
  GATGACTAGC ACATCTATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135937004	ENSMUSSNP2652822	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108230402					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136390250 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr585842	regulatory region 585842			1 bp proximal
Tssr31878	transcription start site region 31878			397 bp upstream
Tssr35850	transcription start site region 35850			163 bp downstream