rs108231053 SNP Detail

Summary

• ID
  rs108231053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57529728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATGGACA GAGAAGAGAA
  AAAGAGGGGT TGCAAATGGC GTGGGTGGGT GGGGGGAGAC AAAAGCAGGC AGAAGTCTGT
  GAGTCTGTGA GCCCAGCCTA GGCTAGTCTA CATATTGAAT TTTCAGGACA GTCAGAGCTG
  CATGGAGAGA CTCTGTCTTT AAAAAAGGAA AGGGGGTAGG GAGAGAAAGA GAGAGAGAGA
  R
  AGAAAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGACTCAC
  CGTGCCAATA CAGGAATCCT TCACATCCAC CCACACAGAG TCAGCCACCA CCTCCCTCTG
  GCCACTAGCT CCAATCAGGG TGTAGTAAGC CACCAGGCGA AATGAAGGAA TAAACTCTGG
  AGTGATGGGC AGGGACAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ
ss130940611	NCBIM37_NT_039649_chr17_57362151	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ
rs108231053					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130940611	NCBIM37_NT_039649_chr17_57362151	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57529728 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	1594 bp proximal
Gm65552	predicted gene, 65552	1218 bp downstream
Tssr145377	transcription start site region 145377	497 bp downstream
Tssr145378	transcription start site region 145378	384 bp upstream
Tssr145379	transcription start site region 145379	465 bp upstream
Tssr145380	transcription start site region 145380	494 bp upstream
Tssr145381	transcription start site region 145381	560 bp upstream
Tssr145382	transcription start site region 145382	1090 bp upstream
Tssr145383	transcription start site region 145383	1206 bp upstream
Tssr145384	transcription start site region 145384	1339 bp upstream
Tssr148935	transcription start site region 148935	1676 bp upstream
Tssr148936	transcription start site region 148936	1655 bp upstream
Tssr148937	transcription start site region 148937	1634 bp upstream
Tssr148938	transcription start site region 148938	1328 bp upstream
Tssr148939	transcription start site region 148939	799 bp upstream
Tssr148940	transcription start site region 148940	455 bp upstream
Tssr148941	transcription start site region 148941	382 bp upstream
Tssr148942	transcription start site region 148942	103 bp downstream
Tssr148943	transcription start site region 148943	143 bp downstream
Tssr148944	transcription start site region 148944	163 bp downstream
Tssr148945	transcription start site region 148945	191 bp downstream
Tssr148946	transcription start site region 148946	216 bp downstream
Tssr148947	transcription start site region 148947	455 bp downstream
Tssr148948	transcription start site region 148948	507 bp downstream
Tssr148949	transcription start site region 148949	562 bp downstream
Tssr148950	transcription start site region 148950	1127 bp downstream
Tssr148951	transcription start site region 148951	1168 bp downstream
Tssr148952	transcription start site region 148952	1209 bp downstream
Tssr148953	transcription start site region 148953	1393 bp downstream
Tssr148954	transcription start site region 148954	1444 bp downstream
Tssr148955	transcription start site region 148955	1591 bp downstream
Tssr148956	transcription start site region 148956	1624 bp downstream