rs108231788 SNP Detail

Summary

• ID
  rs108231788
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27937443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAGGTGG CCGTCTGTGG
  GATGGGACAC CCATGAGGTT TTGTTGCCTG GGGCCATGCA CTCCTCAGGG TGGGAATGTC
  TAAAGCCTTG AGAAGCCCAT GAAGGCACAC TCCACCAAAA AGGAAGTGAG AGGGAAAGAC
  CCTAAACCAA GCTTGTTGCC TTGGTAACCC ATCACATCTC CATGTCTCTC CTGCCCCCTA
  M
  TGGGCCTTTC CGGAGATCCC AGCTCTAAGG AGAACAGTTA CACTCAGCCA GAAACATAAA
  TGCTTTTTTT GCTGGACACT TTTGCTTTCC ACAGACTTCT CGAGGAGAAA ACCCACCCAG
  GAACCGCTCT GCCCTGGAAT TTTAGAGAGG AAGAGACCGG AGCACACAGG AGGGGGTCCA
  ATCCTTGCCC AGTGCTTAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325349185	CHEV_17_27855414	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108231788					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27937443 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8855	CpG island 8855	1081 bp distal
Rr524285	regulatory region 524285	within coordinates
Rr524286	regulatory region 524286	353 bp proximal
Spdef	SAM pointed domain containing ets transcription factor	within coordinates