rs108236186 SNP Detail

Summary

• ID
  rs108236186
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:45544171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTTTACACGT GTGTTTTCTT AAGGGTGACT AAGGCTCCTA
  ACGGGGTGTG CCTAATGGAT ATTGGCAGGC CCATTTGACC CCTTGAAATA CTGTGTCTAC
  R
  AGACCTGTGG ACCTGAGCTG TTTGGAAAGG CGCTTGTAAA GCTTAGCTGA CACTTGTAGC
  ATGCTTCCTC AATGCGTTTG TGTTTTTGGA ATCCAGATGG T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148962701	ENSMUSSNP3261371	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108236186					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:45544171 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5531	CpG island 5531	125 bp distal
Gm56579	predicted gene, 56579	1116 bp upstream
Mylip	myosin regulatory light chain interacting protein	within coordinates
Rr403746	regulatory region 403746	956 bp downstream
Rr478673	regulatory region 478673	943 bp distal
Rr478674	regulatory region 478674	1162 bp distal
Rr478675	regulatory region 478675	within coordinates
Rr478676	regulatory region 478676	626 bp proximal
Rr478677	regulatory region 478677	1127 bp proximal
Tssr119571	transcription start site region 119571	945 bp downstream
Tssr119572	transcription start site region 119572	1069 bp upstream
Tssr119573	transcription start site region 119573	1085 bp upstream