rs108236408 SNP Detail

Summary

• ID
  rs108236408
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24338376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GTAGACCGTC CTCACCTTTT TGACCCTTCC TTTTCTGTTT
  CTGCTCCCCC ACATCCCCTG CAGGCAATGA GAGTGCATAT GAGCCTAACG GTGCAGAGTG
  C
  TACAGCTGTG TGGGTCTGAG CCGCGAGAAG TGCCAGGGCT CCATGCCGCC GGTCGTGAAC
  TGCTACAACG CCAGTGGCCG TGTCTACAAG GGCTGCTTCG A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148600717	ENSMUSSNP3297176	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs108236408					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24338376 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18554	CpG island 18554	1566 bp distal
Cpgi18555	CpG island 18555	within coordinates
Cpgi18556	CpG island 18556	1078 bp proximal
Gm26550	predicted gene, 26550	1035 bp upstream
Lypd3	Ly6/Plaur domain containing 3	within coordinates
Rr167239	regulatory region 167239	within coordinates
Rr172826	regulatory region 172826	1500 bp proximal
Tssr65020	transcription start site region 65020	168 bp downstream
Tssr65021	transcription start site region 65021	154 bp downstream
Tssr65022	transcription start site region 65022	1248 bp upstream