rs108237153 SNP Detail

Summary

• ID
  rs108237153
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26728750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGTCCGC CGCAACACCA
  CGGAGTTGGA TACACAAACA TAAACATTGC ACCACTCTGA AGGGGTGCCG AGTCAGGAAC
  ATTCTGCGGT TTCTTCCTCT TTGCAAGGGG AGGTGTCTTA CTACCATGTG TCTTTGCCCA
  GCAACGTCCG CTTTGGCCTC TCTTAGCTCT TGCGCTCTGC CTAGATTCTT CTGTAAATTC
  R
  GAATACGTTA TTTTTAAAGG GCGTTTTTAC ATTCCTTTGA GCATTGATCC TAAAAGAACA
  GCAAAGAAAT CTTCAGATAA CACCACCCTC CCTACATCTC AGAAGAGCGA CAGAAAGAAA
  AAAATTATTT GTTTATTCTA CTTATTCAGC TGAGGACCTC AACATATTTT TTGCATTGAA
  TCATAAAATG TTACAGCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397901241	MGP_WTSI_17_26646721	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108237153					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397901241	MGP_WTSI_17_26646721	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26728750 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8811	CpG island 8811	753 bp distal
Dusp1	dual specificity phosphatase 1	1304 bp upstream
Gm56886	predicted gene, 56886	within coordinates
Rr339410	regulatory region 339410	within coordinates
Rr392454	regulatory region 392454	1115 bp upstream
Rr405112	regulatory region 405112	1043 bp downstream
Rr405113	regulatory region 405113	671 bp downstream
Rr406958	regulatory region 406958	within coordinates
Tssr5044	transcription start site region 5044	812 bp downstream
Tssr5045	transcription start site region 5045	308 bp upstream
Tssr5046	transcription start site region 5046	255 bp upstream
Tssr5047	transcription start site region 5047	244 bp upstream
Tssr143232	transcription start site region 143232	1096 bp downstream
Tssr143233	transcription start site region 143233	1045 bp downstream
Tssr143234	transcription start site region 143234	1002 bp downstream
Tssr143235	transcription start site region 143235	68 bp downstream
Tssr143236	transcription start site region 143236	35 bp downstream
Tssr146952	transcription start site region 146952	1569 bp upstream
Tssr146953	transcription start site region 146953	1529 bp upstream
Tssr146954	transcription start site region 146954	1294 bp upstream
Tssr146955	transcription start site region 146955	894 bp upstream
Tssr146956	transcription start site region 146956	277 bp upstream
Tssr146957	transcription start site region 146957	207 bp upstream