rs108237246 SNP Detail

Summary

• ID
  rs108237246
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:92896974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CCCCTTTAGT AACCAGATAC ATGGTCCGTT CGTTATCAAG
  TGTGACAGGT GTGATGTCTG ACACACAGAG ACACTAGAAT ATGCCTGTCA GTGTTAATAA
  C
  CCCCCACTCT TTCTTTAATA TGATTACACT GTCACACTCT TCAGACACAC CAGAAGAGGG
  CATCAGATCC CATTACAGAT GGTTGTGAGC CACCATGTGG T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147336908	ENSMUSSNP2996934	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108237246					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:92896974 () rs orientation: forward

Symbol	Name	Function Class
Cfap54	cilia and flagella associated protein 54	within coordinates
Rr217502	regulatory region 217502	27 bp proximal
Rr223960	regulatory region 223960	506 bp distal