rs108239304 SNP Detail

Summary

• ID
  rs108239304
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70417268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACATCTTC TGCTGCCGCT CAGGCTCAGC CGCTGATACC
  CAAGCAGTGG CAGACGCTGT CACTTACCAG CTTGGTTTCC ACAGGTACTT GTGGGCAGGG
  R
  AGGAACAACG ACCCTGAAGG CTCTGGAACA TAAGGCACTA AAAGGCCTGA CTCCAGATCC
  TGATATTGCT TTGTTTGTGA TCTTCCAACC CCACCTTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132372320	ENSMUSSNP1636612	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss323735963	CHEV_11_70339944	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108239304					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70417268 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	900 bp distal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	within coordinates
Rr369269	regulatory region 369269	1058 bp downstream
Rr450322	regulatory region 450322	1046 bp distal
Tssr102728	transcription start site region 102728	1048 bp downstream
Tssr102729	transcription start site region 102729	511 bp downstream
Tssr102730	transcription start site region 102730	467 bp downstream
Tssr102731	transcription start site region 102731	408 bp downstream