rs108241444 SNP Detail

Summary

• ID
  rs108241444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28394478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACAGCTTC CTCACCAATC
  TTTCGGACCT GGAATGTTTT AGAACCGTTG CTTTGGCTGG GTATAGTGAC TCACGCCTTT
  GATCCTAGCA CTTGGGGAGG GAGAGGCAGG CAGATGTGTG AGTTTGAGGC CAGCCTGGTC
  TACCTAGACT AAGATGCAGG CCAGCCAAGG CCACGTGGTG GGATGACAAC TTTTATCTCT
  Y
  CCTTCAGACA AATGGTTTCT GTGTAATGGA GAGGAAACGA ACCGAATACC ATCTGCAAGG
  AAGAGCTATC TGCCCATATG GTAAAGGGTG GTGGCGCTGA GCAGACATCC AGGTCACTCG
  GAATTCTAGT ATTTTCAACT CACCAGAAAA CTAAAAGTGA TCCTGAACTT TTTCATTGAG
  TATGTGTGTG CATTTGTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325352114	CHEV_17_28312449	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108241444					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28394478 () rs orientation: forward

Symbol	Name	Function Class
C230013L11Rik	RIKEN cDNA C230013L11 gene	within coordinates
Cpgi8870	CpG island 8870	1047 bp proximal
Rr339474	regulatory region 339474	522 bp proximal
Scube3	signal peptide, CUB domain, EGF-like 3	650 bp downstream
Tssr143392	transcription start site region 143392	1626 bp upstream
Tssr143393	transcription start site region 143393	1892 bp upstream
Zfp523	zinc finger protein 523	1658 bp upstream