rs108245228 SNP Detail

Summary

• ID
  rs108245228
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147978593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACAACTAG AGTTCATTAT
  ATGATGGTTT TGGTAGCCTG ACATAGTGGA AACTCAATAG AAGTAGAAAC TATTTTATAA
  ACCTTATATT ATTTTTTAAT TTAGGTTGGT TCTTTCTACA TTTTAATTTA CTTGTAATTC
  ATTCTTTATA CTCCATATTC CATTCCCAGC TCACCCTATC CACCCTGCAA ATGCTCCTCC
  M
  CCTCCCACAC CTCCTCCCCA CCCCATTCTG TCTCCACTTG AATGCCCCCA TCCCCCAGCA
  CACCTGACCT CTAAACTCCC TGGAGCCTCC AGTCTCTTGA GGGTTAGGTG CATCATCTCT
  GAATGAACAC AGACCTGGAA GTCCTCTAGT GGATATGTGT TGGGGGCCTC ATATCAGATA
  GTGTATGCTG CATGTTTGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136057917	ENSMUSSNP1437492	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
ss321014842	CHEV_3_147935921	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108245228					SNP	C	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147978593 () rs orientation: forward

Symbol	Name	Function Class
Rr375892	regulatory region 375892	1006 bp upstream
Rr587183	regulatory region 587183	491 bp distal
Rr587184	regulatory region 587184	189 bp distal