rs108245287 SNP Detail

Summary

• ID
  rs108245287
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127430737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTAGGGGC TTCAGTTTCT CTTTGCCAGC ACTTGTTATT
  GTCTGTCCTG TTCAGAGAAC CAAGCTGTGA CGATATACTA ATTTTGTGGC TTTGATTTCT
  R
  ATGGGCTCGT TTCCATGCGC TTAATAGCCA TGTGTGTATG TTCTTGAAGC AATATCTGTT
  CAAATCTTTT GTCTGTGTGC GCCTGTAACT TGATTGTGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147535348	ENSMUSSNP1743692	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108245287					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127430737 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12227	CpG island 12227	793 bp distal
Mrps5	mitochondrial ribosomal protein S5	Intron
Rr564563	regulatory region 564563	1734 bp distal
Rr564564	regulatory region 564564	1585 bp distal
Rr564565	regulatory region 564565	707 bp distal
Rr564566	regulatory region 564566	1236 bp distal
Rr564567	regulatory region 564567	224 bp distal
Rr564568	regulatory region 564568	1257 bp proximal
Tssr20024	transcription start site region 20024	1554 bp downstream
Tssr20025	transcription start site region 20025	1538 bp downstream
Tssr20026	transcription start site region 20026	1387 bp downstream
Tssr20027	transcription start site region 20027	1504 bp upstream
Tssr20028	transcription start site region 20028	1925 bp upstream
Zfp661	zinc finger protein 661	1723 bp upstream