rs108245577 SNP Detail

Summary

• ID
  rs108245577
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47920838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTGTCAA ACAAATGGCC
  TCAAAGTGAA ATTCCCTGAC GACACCACAG AAGGACCGTC AAACCTTGTC TTGGTCACCC
  AGCAAGTTCA AGTCCAGCCT GAACAACTTA ACGAGACTCA GTCTCAGAGT TAAAAAAAAA
  AAGTTATTTT AAGGGCAGGT GTGGTGTCAC CCACCTATCA TGCCACCACA TGGAAAACAG
  R
  GGCAAGATCA GGAGTTCAAG GTCAGCCTCC CCTACAGCAT TAGATGCCAT CCCAGGCTCC
  ATGAGCCCTT ACTTTAAAAA AAACTAAAAG AAACAGAAAA AGCTGCTGTA GGCCCAAAAC
  CATGTTCAAA TGTGTCAATA TTGCTTTTTA GGAGAAATAA GAATGGAAGA TTAAGCAACT
  GGGAGGTGAA CAACAATTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398350529	MGP_WTSI_17_47746862	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108245577					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398350529	MGP_WTSI_17_47746862	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47920838 () rs orientation: forward

Symbol	Name	Function Class
Bysl	bystin-like	within coordinates
Cpgi9265	CpG island 9265	887 bp proximal
Gm20517	predicted gene 20517	1676 bp upstream
Med20	mediator complex subunit 20	1672 bp upstream
Rr331712	regulatory region 331712	within coordinates
Rr339937	regulatory region 339937	within coordinates
Rr405326	regulatory region 405326	1456 bp upstream
Tssr5145	transcription start site region 5145	1333 bp downstream
Tssr144986	transcription start site region 144986	1644 bp upstream
Tssr144987	transcription start site region 144987	1657 bp upstream
Tssr144988	transcription start site region 144988	1710 bp upstream
Tssr148446	transcription start site region 148446	1261 bp downstream
Tssr148447	transcription start site region 148447	1298 bp downstream
Tssr148448	transcription start site region 148448	1510 bp downstream
Tssr148449	transcription start site region 148449	1536 bp downstream