rs108245654 SNP Detail

Summary

• ID
  rs108245654
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:3374854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CGGAGCTCTT TTGTCATGTA AATTATTGCT TTTCTTAACT
  AAAGCCTCGC TAGACTTAAC CTTACACTTG AATTTTCTCT TTTATCTATT TATTTACTTT
  T
  AAAAAATGAG ATAGGATCTC ATGTAACACA GGCTGCCCTC CAGCCTGCTC TGTACCCAAG
  GTTGGTTTTG AACCCCCGAT CTCCTTCCTG CACCCACCCA T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146001614	ENSMUSSNP2162056	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108245654					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:3374854 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10364	CpG island 10364	617 bp distal
Cpgi10365	CpG island 10365	77 bp proximal
Cpt1a	carnitine palmitoyltransferase 1a, liver	within coordinates
Gm58963	predicted gene, 58963	1106 bp upstream
Rr394044	regulatory region 394044	within coordinates
Rr542377	regulatory region 542377	1657 bp distal
Rr542380	regulatory region 542380	1559 bp distal
Rr542381	regulatory region 542381	1340 bp distal
Tssr154176	transcription start site region 154176	1515 bp downstream
Tssr154177	transcription start site region 154177	1501 bp downstream
Tssr154178	transcription start site region 154178	832 bp upstream
Tssr157384	transcription start site region 157384	1133 bp upstream