rs108247230 SNP Detail

Summary

• ID
  rs108247230
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85391993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC AGTGCGTGGG TCTCCCTGTA
  G
  TGGAGTGAAA GGGTATTTGT TGGGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145391642	ENSMUSSNP5934560	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss322751244	CHEV_8_87189263	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108247230					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85391993 () rs orientation: forward

Symbol	Name	Function Class
4930447I22Rik	RIKEN cDNA 4930447I22 gene	338 bp upstream
Cpgi20703	CpG island 20703	853 bp distal
Cpgi20704	CpG island 20704	within coordinates
Gm26664	predicted gene, 26664	within coordinates
Gm50464	predicted gene, 50464	within coordinates
Rr368565	regulatory region 368565	1164 bp downstream
Rr368566	regulatory region 368566	206 bp downstream
Tssr2627	transcription start site region 2627	226 bp downstream
Tssr78425	transcription start site region 78425	1126 bp downstream
Tssr78426	transcription start site region 78426	1107 bp downstream
Tssr78427	transcription start site region 78427	799 bp downstream
Tssr82110	transcription start site region 82110	1409 bp upstream