rs108250723 SNP Detail

Summary

• ID
  rs108250723
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46993458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT TTTTTTTTTT TTTTTTTTGG
  T
  TTTTCGAGAC AGGGTTTCTC TGTAT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145701082	ENSMUSSNP1463672	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs108250723					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46993458 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9239	CpG island 9239	956 bp distal
Klhdc3	kelch domain containing 3	1618 bp upstream
Mea1	male enhanced antigen 1	within coordinates
Ppp2r5d	protein phosphatase 2, regulatory subunit B', delta	459 bp downstream
Rr405317	regulatory region 405317	1442 bp downstream
Rr527795	regulatory region 527795	1342 bp distal
Rr527796	regulatory region 527796	347 bp proximal
Tssr5136	transcription start site region 5136	1751 bp upstream
Tssr5137	transcription start site region 5137	1588 bp upstream
Tssr144873	transcription start site region 144873	1521 bp downstream
Tssr144874	transcription start site region 144874	1348 bp downstream
Tssr144875	transcription start site region 144875	498 bp downstream
Tssr144876	transcription start site region 144876	492 bp downstream
Tssr148367	transcription start site region 148367	1798 bp upstream
Tssr148368	transcription start site region 148368	1776 bp upstream
Tssr148369	transcription start site region 148369	1757 bp upstream
Tssr148370	transcription start site region 148370	1698 bp upstream
Tssr148371	transcription start site region 148371	1673 bp upstream
Tssr148372	transcription start site region 148372	1599 bp upstream
Tssr148373	transcription start site region 148373	627 bp upstream
Tssr148374	transcription start site region 148374	608 bp upstream