rs108250801 SNP Detail

Summary

• ID
  rs108250801
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6156475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAACGTTTGC CAATGATACT CAGAAATAGA AAACAGTGCC
  TAACAGTTGG GAAGAGTGTC TACTGTTCTT AGCCTTGCCT CAAGGAAAGA TGCGATCTTG
  A
  CTATTTTTAC ATTTTCAACC ACGCATTCTC TGCACCCAGC AACGCCTTCT TTGTAACGGT
  GGAAAACCGA GGGATGGCTG AAGTTTCCCT TCTTAGCAC                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325290089	CHEV_17_6106200	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108250801					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6156475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8568	CpG island 8568	152 bp proximal
Gm65964	predicted gene, 65964	within coordinates
Rr405018	regulatory region 405018	516 bp upstream
Tssr4988	transcription start site region 4988	1070 bp upstream
Tssr142458	transcription start site region 142458	264 bp upstream
Tssr142459	transcription start site region 142459	321 bp upstream
Tssr142460	transcription start site region 142460	364 bp upstream
Tssr142461	transcription start site region 142461	408 bp upstream
Tssr142462	transcription start site region 142462	608 bp upstream
Tssr142463	transcription start site region 142463	624 bp upstream
Tssr142464	transcription start site region 142464	650 bp upstream
Tssr142465	transcription start site region 142465	680 bp upstream
Tssr142466	transcription start site region 142466	708 bp upstream
Tssr142467	transcription start site region 142467	934 bp upstream
Tssr146313	transcription start site region 146313	78 bp downstream
Tssr146314	transcription start site region 146314	275 bp downstream
Tssr146315	transcription start site region 146315	289 bp downstream
Tulp4	TUB like protein 4	53 bp upstream