rs108251652 SNP Detail

Summary

• ID
  rs108251652
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72715678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGATGCC CCACGGCCCC
  GTGATGGTGC TAGGAACTAA ACTCTGTTCT CTGCAAGAGC AGCAAGTGCT CTCTAAGAGG
  GGAGCCATCT CTCCAGCCCG AGATGCCTGT TGTCGATGAC CTGCACACAG AACTGGACAT
  TCAGTAATGG TTCTAGCCAT GATCTATCTT CTTTCTCTTT TGGCACCTGT GTATGTGTCT
  M
  TGTGTGTGCA TGTACATGTG TATGTGTCTA TGTGCAAGTC GACGTCCACG TGTGGACATT
  CATGCAGAAG CCATGTCCAG TGCTGATATC TTCCTCGGGT TCTCTATTTT TTGGAGGCAG
  GGTCTCTCAG TGAACCCTCT CAATTTGGCT CATCTGATGC CCATCAAGGC CCAGGGGTCC
  TCCTGTCTCC CCCTTTCCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss133286953	ENSMUSSNP2617559	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs108251652					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72715678 () rs orientation: forward

Symbol	Name	Function Class
Gm67726	predicted gene, 67726	935 bp downstream
Rr136561	regulatory region 136561	923 bp proximal
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)	within coordinates