rs108252152 SNP Detail

Summary

• ID
  rs108252152
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:78247660 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T ATGTATTTAT TTTATGTATG TGAGCACACT GTAGCTGTAC
  AGGTGGCTGT GAGTCTTCAT GTGGTTGTTG GGAATTGAAT TTAGGACTTC TGCTCGCTAC
  R
  GTTGGCCCCA CTCACTCCAG TCAACCCTGC TCAGTCCCTG CTCGATCTGG CCCAAAGATT
  TATTTATTAT TATAAATAGG TATACTGTAG CTGTCTTCAG A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137091661	ENSMUSSNP3593938	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss144782842	ENSMUSSNP5357411	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss144839825	ENSMUSSNP5361540	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108252152					SNP	?	G	?

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:78247660 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1780	CpG island 1780	493 bp proximal
Rr225082	regulatory region 225082	within coordinates
Rrp1	ribosomal RNA processing 1	within coordinates
Tssr3266	transcription start site region 3266	1094 bp downstream
Tssr98302	transcription start site region 98302	1025 bp downstream
Tssr98303	transcription start site region 98303	1123 bp downstream