rs108254390 SNP Detail

Summary

• ID
  rs108254390
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:110975385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTTGCT ATAAAAACTT
  CATGAAGCCG CTACCACACT GGAACATGGA CTCTGATCTG TGTTCCTAGG CCGCGCTCAT
  TCACATCTGG CTCCAGAATA AACTCCCTTT AACCTGCTTT GAGGTGAGTT ACGTTTTTGA
  GGTATGGACC AGACAGCGTA AAACATGGCT GCAGTTACAA GATTCATTCT CATTCTTGTG
  G
  TTTTTTTTTT TTTTTTTTCT TTTTATATCC CCGATCTTTT TTTTTTTTTT TTTTAATTTG
  CAGTGGGATA ACATTATCTA GAAGGAGAAT CCTAGGTGGC TTGGCTTGTT CCCAAACAGA
  ATTCCCAAGG CTGAAGAAAA GAAGTGGGTT ATACATCTTC CTGAAGGCCA GGCCACCAGA
  AAGCAGCTGT GGTTGTTAGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149056714	ENSMUSSNP5202451	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108254390					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110975385 () rs orientation: forward

Symbol	Name	Function Class
Hscb	HscB iron-sulfur cluster co-chaperone	1560 bp downstream
Rr616963	regulatory region 616963	2 bp distal
Rr616964	regulatory region 616964	115 bp proximal