rs108255606 SNP Detail

Summary

• ID
  rs108255606
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85923474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAACAAT GGAGGCGAGA
  GGGCAGTGAG AGATGTCAAC TCTTCCTGAG GAGTGAAGTG CAGTTTCTAA TGGTTTCTTA
  TATTAACTAG TTAGCTGTGT TCCTTGGCCC AAGAAGAGGA GAGAAGGAGT AGATGCTTGT
  CCTAGTGGGT GGCTGTCTCC ACTCCCTTTT CCTAGGATTT TCCCCCTCTC GTCCAGGTTT
  K
  TTTGGGGTCC CAGTCTTGCC TAAGGAGCGT GGTCTTTCCT GGGCTAACTT CTTCAGACCT
  CTCCATGGCT ATAAACGCAA TGGAAGAGAG ACCAGGGATG GGATTGTGTG AAACTGGAAG
  TCATTCTCCG AGGGGTGTGA ACTGAACCTG CCCATCCTTT CTCAAATACA GGCCTAGAGT
  TCTAGTTGCC TGGAAGGTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325486765	CHEV_17_86015386	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108255606					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85923474 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9588	CpG island 9588	1967 bp distal
Cpgi9589	CpG island 9589	587 bp distal
Cpgi9590	CpG island 9590	533 bp proximal
Cpgi9591	CpG island 9591	1042 bp proximal
Cpgi9592	CpG island 9592	1688 bp proximal
Gm55783	predicted gene, 55783	1311 bp downstream
Gm55784	predicted gene, 55784	764 bp downstream
Gm55785	predicted gene, 55785	656 bp upstream
Six3	sine oculis-related homeobox 3	within coordinates
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr149707	transcription start site region 149707	1234 bp upstream
Tssr149708	transcription start site region 149708	1036 bp upstream
Tssr149709	transcription start site region 149709	988 bp upstream
Tssr149710	transcription start site region 149710	894 bp upstream
Tssr149711	transcription start site region 149711	870 bp upstream
Tssr149712	transcription start site region 149712	584 bp upstream