rs108258397 SNP Detail

Summary

• ID
  rs108258397
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16049915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AGCCTGACAT CTTCCAAATG GATTACATTC TTCACAACCA
  AGAACATGAG CCCGGTGGAT CTGCTTGGCC ATAACCAGTG GAAGGACCAA ATAAAAGCTT
  K
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTTCCG TTCTTCCTTC
  CTTCCTTTCT CCCTTCCTTT CTTTCTCTTT TCTTTTCTTT T                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148383677	ENSMUSSNP3933064	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108258397					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16049915 () rs orientation: forward

Symbol	Name	Function Class
Bbc3	BCL2 binding component 3	within coordinates
Cpgi18373	CpG island 18373	1478 bp distal
Rr167075	regulatory region 167075	1114 bp distal
Rr380460	regulatory region 380460	within coordinates
Tssr64602	transcription start site region 64602	384 bp downstream
Tssr70737	transcription start site region 70737	1941 bp upstream
Tssr70738	transcription start site region 70738	1927 bp upstream