rs108258918 SNP Detail

Summary

• ID
  rs108258918
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61327419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCAAGTG CCTCACAGGC
  CACTGTGCCC ATTTTGAGTC TAAGTAGAAA TTCATCCTTT CTTTTTTTTT TTTTTGTTTG
  TTTTGTTTTG TTTTTTTTCG AGACAGGGTT TCTCTGTGTA GTCCTGGCTG TCCTGGAACT
  CACTTTGTAG ACCAGGCTGG CCTCGAACTC AGAAATCCGC CTGCCTCTGT CTCCCGAGTA
  Y
  TAGGATTAAA GGCGTGCACC ACCACGCCCG GCGAAATTCA TCCTCTCTTC AACTTAATTT
  AAAGCCCAAG TTCAAATTAA AACACCACCA GAATTAAGAG TCCAAGAAGA GCACTAAAGA
  ACAAAAAAAT TAGGCAAAAC TGTAAAGCTT CTCACCTGGA GAATTCTACT TTTCTGGAGA
  TTCAGTCTTG CCTGCACATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147254492	ENSMUSSNP5142815	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C		C
ss325641572	CHEV_18_61354001	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs108258918					SNP	C	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61327419 () rs orientation: forward

Symbol	Name	Function Class
Rr354846	regulatory region 354846	220 bp distal
Rr356345	regulatory region 356345	28 bp proximal
Tssr153542	transcription start site region 153542	1851 bp downstream