rs108264006 SNP Detail

Summary

• ID
  rs108264006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4523580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGTCTGG AGATCTTGGT
  GTAATGTGAA GGTCCCAGGC TTCCCCGGGC TCCCCACCTC AGTGATGTTC TTGGTGACTT
  TTGCTTCCAC GTCATATCTC TCTTCATCCA CTTTGTCCAC CCGAGCGTGA AGCTGTCGGC
  ATAAGTCCTG GTGAAGGAAC GCGTGGATGC TGAGAGGGAG GCTGGAGATT GGGTTCCCTG
  R
  TCTGAGAGAG GAGACCTCTG GGTCTGAGGA AGGAGGCCTA GGCTCTGGAC CCCCGAGTTT
  GAGAGAGGAG TGCTGGGGTC TGGACTCCTG AGTCTGAGGA AGGAGGGGGT GAAAGGAAGC
  TGACACCGGA ATCTGCACTC CAGGGAACTT AAAGAAATAT GGCCGGGAAC TAAGAATTCT
  GAGACCTGGC AGATAGAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss148179397	ENSMUSSNP2945515	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs108264006					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4523580 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	946 bp proximal
Rr641974	regulatory region 641974	1715 bp distal
Rr641975	regulatory region 641975	848 bp proximal
Rr641976	regulatory region 641976	1937 bp proximal
Tnni3	troponin I, cardiac 3	within coordinates
Tssr64334	transcription start site region 64334	1170 bp downstream
Tssr64335	transcription start site region 64335	99 bp downstream
Tssr64336	transcription start site region 64336	1089 bp upstream
Tssr64337	transcription start site region 64337	1232 bp upstream
Tssr70484	transcription start site region 70484	1295 bp downstream
Tssr70485	transcription start site region 70485	1846 bp downstream