rs108265958 SNP Detail

Summary

• ID
  rs108265958
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123061377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCACACGC GGCTGCACCG CGACTCCCCA TCAACTTGGC
  TCTCTGGTTC CCGGAGGAGG AGAGGGCTGG AAATATTCCG AGGGAAAATG GCAACTACAG
  Y
  GTTCAGCTCC GGGACATCAT TAGAGGGAAA CGCGAACTTG TCCCGGGTGA CAGTGGAAGG
  GGAAGGGTGT CTTTGTAGAA TCCGAGCGCT CGGGGTTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	MSM/Ms	SM/J
ss135761731	ENSMUSSNP6367792	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss320918508	CHEV_3_122970646	CHEVERUD	SCREENING_POP	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	MSM/Ms	SM/J
rs108265958					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123061377 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13776	CpG island 13776	within coordinates
Gm56815	predicted gene, 56815	374 bp downstream
Gm66521	predicted gene, 66521	311 bp upstream
Rr77168	regulatory region 77168	within coordinates
Sec24d	SEC24 homolog D, COPII coat complex component	within coordinates
Tssr31542	transcription start site region 31542	526 bp downstream
Tssr31543	transcription start site region 31543	507 bp downstream
Tssr31544	transcription start site region 31544	228 bp downstream
Tssr31545	transcription start site region 31545	1964 bp upstream