rs108271761 SNP Detail

Summary

• ID
  rs108271761
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127690426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATTGTGT ATCTGTAACT
  ATCTGTACAC AACAGACAGA TATCCTGTGG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTATGTGTA AAAGACAGAG AGAGAGGAAG AGAGAGAGTG TCAGAGGTGA GGAACACTGT
  AACAGACTAC ATGAGGGAGA TTATGTATGA AATCGGCCAT AGGTGCATGA GGGAGATTGT
  M
  TCTGACAGGT TTTTAATGCA TGTGAGAGCC CATGTGTGAT TGTGTGTGAG TAACTATACA
  CACACACACA TACACACACT TAGATGTTGT GTTTAGTGTG TGTGTGTGTG TGTGTGTGTG
  AGAGAGAGAG AGAGAGAGAG AGAGAAGGAG GAGGAGGAGG AGGAAGTTAT GTGTTGTGAG
  AAAGTGTGTG TAAGAAACAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135874466	ENSMUSSNP964570	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320957994	CHEV_3_127599695	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs108271761					SNP	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127690426 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	254 bp distal
Fam241a	family with sequence similarity 241, member A	454 bp upstream
Rr398009	regulatory region 398009	204 bp downstream
Rr584896	regulatory region 584896	758 bp distal
Rr584897	regulatory region 584897	within coordinates
Tssr35607	transcription start site region 35607	1264 bp upstream
Tssr35608	transcription start site region 35608	544 bp upstream
Tssr35609	transcription start site region 35609	507 bp upstream
Tssr35610	transcription start site region 35610	440 bp upstream