rs108274042 SNP Detail

Summary

• ID
  rs108274042
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40159731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGCGTGTG GGTTCGCCCG
  TCCCGATGCC ACGCTTTTCT GGCCTCGCGT GTCCTCCCCG CTCCTGTCCC GGGTACCTAG
  CTGTCGCGTT CCGGCGCGGA GGTTTAAAGA CCCCGGGGGG GTCGCCCTGC CGCCCCCAGG
  GTCGGGGGGC GGTGGGGCCC GTAGGGAAGT CGGTCGTTCG GGCGGCTCTC AAAAAAAATA
  M
  CAAAAAAAAA AAAAAAAGAA AAAAAAAAAA AGAAAAAAAA GAAAGAAAAA AAAAAGGGGG
  GGGGGCTGGT GAGATGGCTC AGTGGGTAAG AGCACCCGAC TGCTCTCCCG AAGGTCAGGA
  GTTCAAATCC CAGCAACCAC ATGGTGGCTC ATAACCATCT GTAACAAGAT CTGACGCCCT
  CTTCTGGAGT GTCTGAAGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	RIIIS/J	SPRET/EiJ
ss130632269	NCBIM37_NT_039649_chr17_39985785	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	RIIIS/J	SPRET/EiJ
rs108274042					SNP	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130632269	NCBIM37_NT_039649_chr17_39985785	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40159731 () rs orientation: forward

Symbol	Name	Function Class
AY036118	cDNA sequence AY036118	within coordinates
Cpgi9159	CpG island 9159	9 bp distal
Gm26917	predicted gene, 26917	52 bp downstream
Rn18s	18S ribosomal RNA	639 bp distal
Rn18s-rs5	18s RNA, related sequence 5	638 bp downstream
Rr526923	regulatory region 526923	1920 bp distal
Tssr144608	transcription start site region 144608	1946 bp downstream
Tssr144609	transcription start site region 144609	1781 bp downstream
Tssr144610	transcription start site region 144610	1625 bp downstream
Tssr144611	transcription start site region 144611	1502 bp downstream
Tssr144612	transcription start site region 144612	1392 bp downstream
Tssr144613	transcription start site region 144613	1248 bp downstream
Tssr144614	transcription start site region 144614	1226 bp downstream
Tssr144615	transcription start site region 144615	1145 bp downstream
Tssr144616	transcription start site region 144616	1055 bp downstream
Tssr144617	transcription start site region 144617	1028 bp downstream
Tssr144618	transcription start site region 144618	1011 bp downstream
Tssr144619	transcription start site region 144619	968 bp downstream
Tssr144620	transcription start site region 144620	945 bp downstream
Tssr144621	transcription start site region 144621	831 bp downstream
Tssr144622	transcription start site region 144622	815 bp downstream
Tssr144623	transcription start site region 144623	785 bp downstream
Tssr144624	transcription start site region 144624	650 bp downstream
Tssr144625	transcription start site region 144625	633 bp downstream
Tssr144626	transcription start site region 144626	604 bp downstream
Tssr144627	transcription start site region 144627	572 bp downstream
Tssr144628	transcription start site region 144628	413 bp downstream
Tssr144629	transcription start site region 144629	339 bp downstream
Tssr144630	transcription start site region 144630	330 bp downstream
Tssr144631	transcription start site region 144631	233 bp downstream
Tssr144632	transcription start site region 144632	123 bp downstream
Tssr144633	transcription start site region 144633	76 bp downstream
Tssr148064	transcription start site region 148064	1931 bp upstream
Tssr148065	transcription start site region 148065	1056 bp upstream
Tssr148066	transcription start site region 148066	979 bp upstream
Tssr148067	transcription start site region 148067	879 bp upstream
Tssr148068	transcription start site region 148068	781 bp upstream
Tssr148069	transcription start site region 148069	598 bp upstream
Tssr148070	transcription start site region 148070	534 bp upstream
Tssr148071	transcription start site region 148071	508 bp upstream
Tssr148072	transcription start site region 148072	180 bp upstream