rs108277275 SNP Detail

Summary

• ID
  rs108277275
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18911028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAACAAG GTCCTTTATC
  CCCAAAGTCA CGATCCTGCT CCCCCTATCC CAACAAACAC CTGCTCCGAA GGTGTCCAGA
  CAGAGGGAAG GGTAAAGATC GTAGAGGAGC CTGTGAGGGA GAGGGCAGAC CTGGGGTTGG
  GGTAGGGAGT CAGCTCGATG TGGAACTCTT TCTGCCCCCT ACCTCCTCAG CCCCTTCCCC
  R
  GGACCCTTCC CTGTCTTTGG GCATAGCAGG GGGAAATGCT GAATTGAGGG CTGGGCTTGG
  GAATAGTAAA ACAGCAGAAG ACTTTCTGTA CACTGCACTG TCTTCAGCTT TGCCTCTGCC
  CCCTCTCCCC ACCCCAGGTA GAATCCTCTT CTCCCCTAGA CAAATGTGTA TGGCGCCAGT
  AGGGCCATTT TAGTACGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148469581	ENSMUSSNP3489229	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108277275					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18911028 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18450	CpG island 18450	293 bp distal
Cpgi18451	CpG island 18451	1022 bp proximal
Cpgi18452	CpG island 18452	1854 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Gm71808	predicted gene, 71808	492 bp upstream
Rr155272	regulatory region 155272	1173 bp proximal
Rr167138	regulatory region 167138	within coordinates
Tssr64790	transcription start site region 64790	663 bp downstream
Tssr64791	transcription start site region 64791	629 bp downstream
Tssr64792	transcription start site region 64792	591 bp downstream
Tssr64793	transcription start site region 64793	566 bp downstream
Tssr64794	transcription start site region 64794	410 bp downstream
Tssr64795	transcription start site region 64795	1100 bp upstream
Tssr64796	transcription start site region 64796	1878 bp upstream