rs108279738 SNP Detail

Summary

• ID
  rs108279738
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88373383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AAATGAGTGT AAAAGGGAGG AGATAGGGGC AAAAGAGGCG
  TCGTCGTTCC TCCTCCTTAA AGGAACCTTC CCTCCTCAGC CCCAGCGCCG CCGCCGCCGC
  T
  GCCGCTGCTG CTGCTGCCGC TGCTGCTGCT GCTGCTGCTC CGTGGCAGGA GGAGCCATTG
  ACACCGCCGG AGCCTCTCCG CTCAAGCCCT GTCGGTCCCT C                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146187226	ENSMUSSNP6562382	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108279738					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88373383 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9636	CpG island 9636	within coordinates
Fbxo11	F-box protein 11	664 bp upstream
Rr333911	regulatory region 333911	1618 bp proximal
Rr340317	regulatory region 340317	within coordinates
Rr370332	regulatory region 370332	523 bp upstream
Rr405528	regulatory region 405528	144 bp upstream
Tssr146222	transcription start site region 146222	1154 bp downstream
Tssr146223	transcription start site region 146223	1126 bp downstream
Tssr149795	transcription start site region 149795	226 bp upstream
Tssr149796	transcription start site region 149796	124 bp upstream
Tssr149797	transcription start site region 149797	82 bp upstream
Tssr149798	transcription start site region 149798	27 bp downstream
Tssr149799	transcription start site region 149799	49 bp downstream