rs108282393 SNP Detail

Summary

• ID
  rs108282393
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:166228901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATTTTGGT AGTTTCAAAG CTATGCCATA CATACACATG
  TGTAAGTGTA AGCATGAGTG CGGAGAAGGG TACATGTACA CACATACTCT TTCTGAGAGT
  G
  TCATGTAGCT CAGGCTGGCC AAGAATGACC CTGAACTTCA GAGCCTCTAC CTCCCAAGTG
  TTGGGATTAA CTGTATTTTT CTAATTTCTT TTGATAAAT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146018953	ENSMUSSNP541739	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108282393					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:166228901 () rs orientation: forward

Symbol	Name	Function Class
Pogk	pogo transposable element with KRAB domain	Intron
Rr422579	regulatory region 422579	98 bp proximal
Rr422580	regulatory region 422580	746 bp proximal