rs108289088 SNP Detail

Summary

• ID
  rs108289088
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6887589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ACCTTCTACT TAGGCTAGAA GACCCTTTTA CTGCAAGCCA
  CACAAGCCAA GTCCAATTCC TTGGATCCAG TTATGTGACT ATGCTGGGCA GAAGCTGTCA
  A
  TTGGGTGAGA TGGCAGGGCA GGCAGATTCA GCCTGCCCTC TGTTGTCAGC ACTTTCCAGG
  GCTGACGTTT CACACCCAGA AGCGTTGTGT TACTCATGTC T                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145092856	ENSMUSSNP5441558	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs108289088					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6887589 () rs orientation: forward

Symbol	Name	Function Class
Gm64560	predicted gene, 64560	1004 bp downstream
Rr521401	regulatory region 521401	1220 bp distal
Rr521402	regulatory region 521402	within coordinates
Tmem181c-ps	transmembrane protein 181C, pseudogene	within coordinates