rs108289589 SNP Detail

Summary

• ID
  rs108289589
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40156640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCCCGACG TTGCGCCTCG CTGCTGTGTG CTTGGGGGGG
  GGGGCCGCTG CGGCCTCCGC CCGCCCGTGA GCCCCTGCCG CACCCGCCGG TGTGCGGTTT
  C
  GCGCCGCGGT CAGTTGGGCC CTGGCGTTGT GTCGCGTCGG GAGCGTGTCC GCCTCGCGGC
  GGCTAGACGC GGGTGTCGCC GGGCTCCGAC GGGTGGCCT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385448	CHEV_17_39982694	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108289589					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40156640 () rs orientation: forward

Symbol	Name	Function Class
AY036118	cDNA sequence AY036118	1916 bp downstream
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	within coordinates
Rn18s-rs5	18s RNA, related sequence 5	605 bp upstream
Rr331228	regulatory region 331228	1040 bp distal
Rr331229	regulatory region 331229	within coordinates
Rr339832	regulatory region 339832	within coordinates
Tssr144602	transcription start site region 144602	598 bp upstream
Tssr144603	transcription start site region 144603	703 bp upstream
Tssr144604	transcription start site region 144604	761 bp upstream
Tssr144605	transcription start site region 144605	811 bp upstream
Tssr144606	transcription start site region 144606	869 bp upstream
Tssr144607	transcription start site region 144607	978 bp upstream
Tssr144608	transcription start site region 144608	1125 bp upstream
Tssr144609	transcription start site region 144609	1269 bp upstream
Tssr144610	transcription start site region 144610	1428 bp upstream
Tssr144611	transcription start site region 144611	1565 bp upstream
Tssr144612	transcription start site region 144612	1694 bp upstream
Tssr144613	transcription start site region 144613	1813 bp upstream
Tssr144614	transcription start site region 144614	1845 bp upstream
Tssr144615	transcription start site region 144615	1932 bp upstream
Tssr144616	transcription start site region 144616	1967 bp upstream
Tssr148054	transcription start site region 148054	1588 bp upstream
Tssr148055	transcription start site region 148055	1339 bp upstream
Tssr148056	transcription start site region 148056	991 bp upstream
Tssr148057	transcription start site region 148057	599 bp upstream
Tssr148058	transcription start site region 148058	within coordinates
Tssr148059	transcription start site region 148059	29 bp downstream
Tssr148060	transcription start site region 148060	150 bp downstream
Tssr148061	transcription start site region 148061	259 bp downstream
Tssr148062	transcription start site region 148062	774 bp downstream
Tssr148063	transcription start site region 148063	905 bp downstream
Tssr148064	transcription start site region 148064	1147 bp downstream