rs108289845 SNP Detail

Summary

• ID
  rs108289845
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23732560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCCATCA GACCTTTCTC
  TAACTTCTCC ATTGGAGATT TTCATACTCA GTCCAATGTT TAACTGGGAA AGCATCTATC
  TCCTTATTTG TTAGGCTTCT GTCAGTAAGC ACTTCTTGGC ATCTGCAATA ATGTCTGAGT
  TTGGTGTCTG TATATGGGAT GGATCCCCAA GTGGGGCAGT CTCTGGATGA CTTTTCCTTC
  A
  GTCTCTGCTC CATACTTTGT CCCAGTATTT CCTTTGGACA GGATCAATTC TGAGTTAAAA
  TTTTTGAGAT GATTGGGTGG CTGCATCCCC CAACCAGGGA CCTTCCCTAA CCTTTGGATA
  TGGTCTCTAC TGGTTCTCCC TCACCTTTGT TGGGCAATTC AGCCAATCTC ATCTTTTTTG
  AGTTATGGAA GTCTCTTGCT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BUB/BnJ	C57BL/6J	C57BL/10J	C58/J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss130667930	NCBIM37_NT_039649_chr17_23650553	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BUB/BnJ	C57BL/6J	C57BL/10J	C58/J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs108289845					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130667930	NCBIM37_NT_039649_chr17_23650553	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23732560 () rs orientation: forward

Symbol	Name	Function Class
Gm7898	predicted gene 7898	1868 bp upstream
Rr329666	regulatory region 329666	1841 bp proximal