rs108289990 SNP Detail

Summary

• ID
  rs108289990
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47260142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTCGACTT CACGCGGCGA TCACCCCGCG GACGGGGTTG
  ATTCGGAGCC ACCACGTTTG TTTCCGAGGG GTCGTTCGAG ATGAAGGCTT CCAAATGAGA
  T
  CTACTTGCGA GGCTTCCCGT CGCCGGTACG CTGCACCGTG ACAGGGACCC ACCACGTTAA
  GTGCTCACAC CACCAGCGAC ATAAATAGGT TTCAAACCG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148985270	ENSMUSSNP1432899	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108289990					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47260142 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	within coordinates
Cpgi5551	CpG island 5551	within coordinates
Dek	DEK proto-oncogene	465 bp upstream
Rr479039	regulatory region 479039	230 bp distal
Rr479040	regulatory region 479040	within coordinates
Tssr119626	transcription start site region 119626	1074 bp downstream
Tssr119627	transcription start site region 119627	255 bp downstream
Tssr119628	transcription start site region 119628	236 bp downstream
Tssr122369	transcription start site region 122369	1289 bp upstream
Tssr122370	transcription start site region 122370	1142 bp upstream
Tssr122371	transcription start site region 122371	1044 bp upstream
Tssr122372	transcription start site region 122372	964 bp upstream
Tssr122373	transcription start site region 122373	919 bp upstream
Tssr122374	transcription start site region 122374	791 bp upstream
Tssr122375	transcription start site region 122375	556 bp upstream
Tssr122376	transcription start site region 122376	538 bp upstream
Tssr122377	transcription start site region 122377	495 bp upstream
Tssr122378	transcription start site region 122378	460 bp upstream
Tssr122379	transcription start site region 122379	445 bp upstream
Tssr122380	transcription start site region 122380	433 bp upstream