rs108290421 SNP Detail

Summary

• ID
  rs108290421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135762167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTGGTGGG AGAGTTGGGG CAGCTGCATT
  CCACAGCTGC TTCTGCCTCC TGCTTTGCTC TGGAGACAGC TGATGAACAA gtgtgtgtgt
  gtgtgtgtgt gtgtgtgtgt gtgtAGGAGG TGACATTTGA GTGCCCCCTG GAGGCACTCT
  R
  GTCTACCTCC CTGCTCTGCT GCTGCGGTGG CCTGGGGACA TCCTGCCTGT CATCGTGTGG
  GTATCCAGTG TGCACCAGCC CGTGTACTTC TTCAGATCAT CACACTTCTG ATTTTCTGCC
  TATCTGCCTA GGCCTGGTTA TTTTTAACGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145547931	ENSMUSSNP1016627	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss319993813	CHEV_1_137731006	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108290421					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135762167 () rs orientation: forward

Symbol	Name	Function Class
Lad1	ladinin	1088 bp downstream
Rr419292	regulatory region 419292	within coordinates
Rr419293	regulatory region 419293	2 bp distal
Rr419294	regulatory region 419294	1435 bp proximal
Rr419295	regulatory region 419295	1995 bp proximal
Tnnt2	troponin T2, cardiac	1925 bp upstream
Tssr9005	transcription start site region 9005	1951 bp upstream