rs108290738 SNP Detail

Summary

• ID
  rs108290738
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:10431857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAATAGA GTAAGAGGGA
  ACTTGTTTTC TATTCATAAA GTATCCACTT AGATTAAAAT TATCTTCACA GTCCTGACTG
  TTGATTTTAG GTATGTTCTT GACACATATA CCCTCATATT TATATAGTGG CTCAATGTTT
  TATAATATAG AAAAATGGAT AATAAATCTT CAGTTTTCTC CAAAATTACA TGGAAGCAAA
  W
  TTTTTTTTTT TTACTTCTCT CATAAAAACA TCATCTGCTC AATTCATTTT GCAGTACCAA
  CTGAAATATT CAGAATAATT AAAGGGAAAA ATTTAGCAAC AATTATTACT AAACATTGCT
  ATGATAATGT AAAAATTTAA TAGCTCCCCA AATAGACTAA TTTATGTTTT AGCTGGAATA
  AATCTTAGGA CAAAGTAATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397607135	MGP_WTSI_17_10405793	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108290738					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397607135	MGP_WTSI_17_10405793	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:10431857 () rs orientation: forward

Symbol	Name	Function Class
Qki	quaking, KH domain containing RNA binding	within coordinates
Tssr146373	transcription start site region 146373	1189 bp upstream
Tssr146374	transcription start site region 146374	873 bp upstream
Tssr146375	transcription start site region 146375	845 bp upstream
Tssr146376	transcription start site region 146376	758 bp upstream
Tssr146377	transcription start site region 146377	481 bp upstream
Tssr146378	transcription start site region 146378	230 bp downstream