rs108293561 SNP Detail

Summary

• ID
  rs108293561
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116697480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGAACCT CTGATCTGCC
  TGCCTCTGTT TCCTGGGTGG TTTACAGGTG TGCACCACTA TATCTGGTTT TAAGGGAACT
  GTAATTTTCA TGACGATGCT GCTATGGTAC TTTAAAGACT ACATTTATGT TTGACTAGTT
  TATTTAAAAG ATTTTGTCTT AGAGTTTAAA AAAAAATTAC TACATTTTGA TTTTATGCGC
  R
  CACACACACA GACACACAGA CACACACACA CACAGACACA CACACACACA CACACACACA
  CCAAACAAGT AAAACCTACA AGAAAAAAAA CTAAACACGT TTTCCGACCA GCAGTTAGGA
  GATTTTCTCC TTTGTGTTCA GTATTTCTGT CTAAAGGTAG CTGTTGATTT ATTCAGTGGG
  CATTTCCTTA ACATGTAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135675001	ENSMUSSNP351659	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108293561					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116697480 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frrs1	ferric-chelate reductase 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			258 bp proximal
Rr583801	regulatory region 583801			289 bp proximal
Rr583802	regulatory region 583802			530 bp proximal
Tssr31391	transcription start site region 31391			225 bp downstream
Tssr31392	transcription start site region 31392			143 bp downstream
Tssr31393	transcription start site region 31393			116 bp downstream
Tssr31394	transcription start site region 31394			79 bp downstream
Tssr31395	transcription start site region 31395			533 bp upstream