rs108293886 SNP Detail

Summary

• ID
  rs108293886
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40158909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTACGCCGGC AGGCGCGGGT AACCCGTTGA ACCCCATTCG
  TGATGGGGAT CGGGGATTGC AATTATTCCC CATGAACGAG GAATTCCCAG TAAGTGCGGG
  T
  CATAAGCTTG CGTTGATTAA GTCCCTGCCC TTTGTACACA CCGCCCGTCG CTACTACCGA
  TTGGATGGTT TAGTGAGGCC CACGGCCCTG GTGGAGCGC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385454	CHEV_17_39984963	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108293886					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40158909 () rs orientation: forward

Symbol	Name	Function Class
AY036118	cDNA sequence AY036118	within coordinates
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	within coordinates
Rn18s-rs5	18s RNA, related sequence 5	within coordinates
Rr526923	regulatory region 526923	1098 bp distal
Tssr144602	transcription start site region 144602	1657 bp downstream
Tssr144603	transcription start site region 144603	1514 bp downstream
Tssr144604	transcription start site region 144604	1493 bp downstream
Tssr144605	transcription start site region 144605	1445 bp downstream
Tssr144606	transcription start site region 144606	1361 bp downstream
Tssr144607	transcription start site region 144607	1260 bp downstream
Tssr144608	transcription start site region 144608	1124 bp downstream
Tssr144609	transcription start site region 144609	959 bp downstream
Tssr144610	transcription start site region 144610	803 bp downstream
Tssr144611	transcription start site region 144611	680 bp downstream
Tssr144612	transcription start site region 144612	570 bp downstream
Tssr144613	transcription start site region 144613	426 bp downstream
Tssr144614	transcription start site region 144614	404 bp downstream
Tssr144615	transcription start site region 144615	323 bp downstream
Tssr144616	transcription start site region 144616	233 bp downstream
Tssr144617	transcription start site region 144617	206 bp downstream
Tssr144618	transcription start site region 144618	189 bp downstream
Tssr144619	transcription start site region 144619	146 bp downstream
Tssr144620	transcription start site region 144620	123 bp downstream
Tssr144621	transcription start site region 144621	9 bp downstream
Tssr144622	transcription start site region 144622	within coordinates
Tssr144623	transcription start site region 144623	35 bp upstream
Tssr144624	transcription start site region 144624	132 bp upstream
Tssr144625	transcription start site region 144625	174 bp upstream
Tssr144626	transcription start site region 144626	191 bp upstream
Tssr144627	transcription start site region 144627	230 bp upstream
Tssr144628	transcription start site region 144628	400 bp upstream
Tssr144629	transcription start site region 144629	431 bp upstream
Tssr144630	transcription start site region 144630	487 bp upstream
Tssr144631	transcription start site region 144631	508 bp upstream
Tssr144632	transcription start site region 144632	680 bp upstream
Tssr144633	transcription start site region 144633	733 bp upstream
Tssr148061	transcription start site region 148061	1994 bp upstream
Tssr148062	transcription start site region 148062	1477 bp upstream
Tssr148063	transcription start site region 148063	1335 bp upstream
Tssr148064	transcription start site region 148064	1109 bp upstream
Tssr148065	transcription start site region 148065	234 bp upstream
Tssr148066	transcription start site region 148066	157 bp upstream
Tssr148067	transcription start site region 148067	57 bp upstream
Tssr148068	transcription start site region 148068	13 bp downstream
Tssr148069	transcription start site region 148069	208 bp downstream
Tssr148070	transcription start site region 148070	277 bp downstream
Tssr148071	transcription start site region 148071	290 bp downstream
Tssr148072	transcription start site region 148072	619 bp downstream