rs108293934 SNP Detail

Summary

• ID
  rs108293934
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6156989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGTAAGA GACGGTGTGA
  CGTCCACTTC CGGCCCCCGC TGACAAGCTC GCCTGTCACT CCGCAGGAGG TGAGTGGTCC
  AGGCTAGGCT AGGCGCCCTG GAGTCTCCGG CGTCGAGCGG CGGGTGGGGG GCTCGAGACC
  GCACCCCGCG CCCGCGCCCG AGCCCGCGCC CGAGCCCGCG CCCGAGCCCG CGCCCCAGCC
  S
  GCGCGAGCCC GGGGCAGCAC CACCCGCCGC GGGTCCGCTC GCGGAGGGCG GGCCGGGGAG
  GCGCCGGGTC ACGTGGCGCG GTCACGTGCC CACCCCCCCA CCCCCCACCC CGACTGACAG
  TCCGGGTGGC GGCCGAGGGA GGCGGAGTCA CAGCCGAGAC CCGGTGGGGG GTAGTTGTGG
  CGGCGGCGGC GGCGGCCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss130502532	NCBIM37_NT_039636_chr17_6106714	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs108293934					SNP	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130502532	NCBIM37_NT_039636_chr17_6106714	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6156989 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8568	CpG island 8568	within coordinates
Gm65964	predicted gene, 65964	344 bp upstream
Rr340081	regulatory region 340081	within coordinates
Rr405018	regulatory region 405018	2 bp upstream
Tssr4988	transcription start site region 4988	556 bp upstream
Tssr142458	transcription start site region 142458	232 bp downstream
Tssr142459	transcription start site region 142459	151 bp downstream
Tssr142460	transcription start site region 142460	114 bp downstream
Tssr142461	transcription start site region 142461	97 bp downstream
Tssr142462	transcription start site region 142462	94 bp upstream
Tssr142463	transcription start site region 142463	110 bp upstream
Tssr142464	transcription start site region 142464	136 bp upstream
Tssr142465	transcription start site region 142465	166 bp upstream
Tssr142466	transcription start site region 142466	194 bp upstream
Tssr142467	transcription start site region 142467	420 bp upstream
Tssr146313	transcription start site region 146313	407 bp upstream
Tssr146314	transcription start site region 146314	226 bp upstream
Tssr146315	transcription start site region 146315	175 bp upstream
Tulp4	TUB like protein 4	within coordinates