rs108296042 SNP Detail

Summary

• ID
  rs108296042
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127690398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACCTATT AAAGTATATG
  ACATCTGTGA AATTGTGTAT CTGTAACTAT CTGTACACAA CAGACAGATA TCCTGTGGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TATGTGTAAA AGACAGAGAG AGAGGAAGAG
  AGAGAGTGTC AGAGGTGAGG AACACTGTAA CAGACTACAT GAGGGAGATT ATGTATGAAA
  K
  CGGCCATAGG TGCATGAGGG AGATTGTATC TGACAGGTTT TTAATGCATG TGAGAGCCCA
  TGTGTGATTG TGTGTGAGTA ACTATACACA CACACACATA CACACACTTA GATGTTGTGT
  TTAGTGTGTG TGTGTGTGTG TGTGTGTGAG AGAGAGAGAG AGAGAGAGAG AGAAGGAGGA
  GGAGGAGGAG GAAGTTATGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135874463	ENSMUSSNP4378974	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320957993	CHEV_3_127599667	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs108296042					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127690398 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	226 bp distal
Fam241a	family with sequence similarity 241, member A	426 bp upstream
Rr398009	regulatory region 398009	176 bp downstream
Rr584896	regulatory region 584896	730 bp distal
Rr584897	regulatory region 584897	within coordinates
Tssr35607	transcription start site region 35607	1236 bp upstream
Tssr35608	transcription start site region 35608	516 bp upstream
Tssr35609	transcription start site region 35609	479 bp upstream
Tssr35610	transcription start site region 35610	412 bp upstream