rs108296368 SNP Detail

Summary

• ID
  rs108296368
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122580461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTCTTT CTTTCTTTCT
  TCCTTCCTTC CTTCCTTCCT TTCTTTTTTT CTTCCTTCCT TCCTTCCTTC CTTTCTTTTT
  TTCTTTCTTT CTCCCCCCCC ACCCCGCCAG ACAGGGTTTC TCTGTAGCCC TGGCTGTCCT
  GGAACTCACT CTATAGACCA GGCTGGCTCA AACTCAGAAA TCCACCTGCC TCTGCCTCCT
  G
  AGTGCTGGGA TTAAAGGTGT GGGCCACCAC ACCAATATCC TTTCAACAAG GTTTTTACTA
  TTTTTCTCTT CTTTTCTTCT TTTTTTCTCC TACTTTTTGA GACAAGATTT CTTTATGTGG
  CTCTGGCTGT CTATAACTCT CTATATAGAC CACGCTAGCC TCAACTCAGA GTTCCACCTG
  CCTCTGCCTC CTGAGTGCTG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss133609455	ENSMUSSNP4043679	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108296368					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122580461 () rs orientation: forward

Symbol	Name	Function Class
Apobec1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	1058 bp upstream
Gdf3	growth differentiation factor 3	1901 bp downstream
Rr399899	regulatory region 399899	990 bp downstream
Rr399900	regulatory region 399900	608 bp upstream
Tssr58686	transcription start site region 58686	797 bp downstream
Tssr62923	transcription start site region 62923	1158 bp upstream
Tssr62924	transcription start site region 62924	1102 bp upstream
Tssr62925	transcription start site region 62925	1080 bp upstream
Tssr62926	transcription start site region 62926	390 bp upstream
Tssr62927	transcription start site region 62927	874 bp downstream