rs108297074 SNP Detail

Summary

• ID
  rs108297074
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47867047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCAGAGG CAGGCAGAAC
  ACCAGTACAC AGAAAATAAC GATAAATAAA TATCTAGAAG CTGGGCATGG TGGTGCACAC
  TCCCAGCACT TGGGAGGCAG AGGCAGGCAG ATTTCTGAGT TTGAGGCCAG CCTGGTCTAC
  AAAGTGAGTT CCAGGACAGC CAGGGCTACA CAGAGAAATC CTGTCTTGAA AAATACAAAA
  Y
  AAACAAACAA ACAAACAAAT AAATAAATAA ATAAATAAAT AAAATATCTA GAAAATAGAA
  GGAGGTCTGC TGAGACTGAT CAGGAGTTAA CAAGCACTTG TCGTGAAAAC CAGACAGTCT
  TAGCTCAAAT GTCAGAACTC ACATGGAGGA AGAAGAGAAT CAACCCTACA GTATTGTCTT
  CTAACCTGCT CTCTGTGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss130872239	NCBIM37_NT_039649_chr17_47693071	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	T	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108297074					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	T	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130872239	NCBIM37_NT_039649_chr17_47693071	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47867047 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Rr335189	regulatory region 335189	1847 bp distal
Rr335190	regulatory region 335190	1247 bp distal
Rr335191	regulatory region 335191	647 bp distal
Rr335192	regulatory region 335192	47 bp distal
Rr335193	regulatory region 335193	154 bp proximal
Tssr144956	transcription start site region 144956	1397 bp upstream
Tssr144957	transcription start site region 144957	1482 bp upstream
Tssr144958	transcription start site region 144958	1578 bp upstream
Tssr144959	transcription start site region 144959	1595 bp upstream
Tssr144960	transcription start site region 144960	1665 bp upstream
Tssr144961	transcription start site region 144961	1706 bp upstream
Tssr144962	transcription start site region 144962	1724 bp upstream
Tssr144963	transcription start site region 144963	1785 bp upstream