rs108304225 SNP Detail

Summary

• ID
  rs108304225
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56783308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTTCCCGT TTCTGTGGGT
  CTCTGTCCCT CCGGGTCCAC AACCCTCGCG GTCCCCATTT CTCCAGCTCC ATCCCTCCAG
  GTCCTCCACA TCCCTCTCCT TCTTGCAGAA TCCGATTACG GCTGCAGCCC GGACCCCCTT
  CGGAGCACAA AGGCGGAGAA GCTTGGAAGC ACAAAGCCGG CGCCGCCCAC CCCGCCCCCT
  S
  TGTCCCCCGT GCGCCCCGTG CACCCCGGTA CCTGCGGGCT CCGCATGCTG CTCCCGGCAC
  CGGGTCGGCC CGGGCTCCGG CGGCTCCGCG TGTGCGCGCG GCCCGAGCTG CCTGGCGGGC
  GGGGCAAAAC CCCACTGCGG CTCGCGCGCC CCCAGCCGGT GACGTCACCC CTTCCGCCGC
  CGCGGCCCTG GGGCCTGGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398558540	MGP_WTSI_17_56615731	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108304225					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398558540	MGP_WTSI_17_56615731	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56783308 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9361	CpG island 9361	1589 bp distal
Cpgi9362	CpG island 9362	within coordinates
Gm9258	predicted gene 9258	within coordinates
Gm32822	predicted gene, 32822	within coordinates
Ptprs	protein tyrosine phosphatase receptor type S	within coordinates
Rr529099	regulatory region 529099	121 bp proximal
Rr529100	regulatory region 529100	143 bp proximal
Rr529101	regulatory region 529101	1819 bp proximal
Tssr148809	transcription start site region 148809	58 bp downstream
Tssr148810	transcription start site region 148810	154 bp downstream
Tssr148811	transcription start site region 148811	178 bp downstream
Tssr148812	transcription start site region 148812	199 bp downstream