rs108304652 SNP Detail

Summary

• ID
  rs108304652
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156713780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTTTTTTT TGAGACAGGG TTTCTCTGTG TAGCCCTGGC
  TGTCCTGGAA CTCACTTTGT AGACCAGGCT GGCCTCGAAC TCAGAAATCC GTATGCCTCT
  R
  CCTCCCGAGT GCTGGGATCA AAGGCGTGCG CCACCATGCC CGGCTGCTTT AAATGTTTTA
  TTTCACGCTT GTGACTAAGA GTAGTTGTTC CTTCCTTAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148084856	ENSMUSSNP5778146	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108304652					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156713780 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rab5if	RAB5 interacting factor			Intron
				Noncoding-Transcript-Variant
Rr568377	regulatory region 568377			1001 bp distal
Rr568378	regulatory region 568378			1710 bp proximal
Rr568379	regulatory region 568379			1963 bp proximal
Tssr21217	transcription start site region 21217			638 bp upstream