rs108307326 SNP Detail

Summary

• ID
  rs108307326
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30222242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCTTTGG GTTTTCTCTT
  CTACAGAAAA GACAATCATC AAGAAGCCAA TACAGAGAGA TGCGAGTGGG GCAGGGGACT
  TCATCTTCCT GTTAGATTTA AAGGCTGCCT CTTTTTATGT GGCAATTCCA TGAGTTGGAG
  AGAAGATTTG AGGGTAGCAT GAGAATGAGG AATGCTGTAT ATGTTTATTC ATTCCTCCCC
  Y
  CCCCCCCAGT CTTGGTATGT CTATGGAGTC CTGGCTATTT TGGAGCTCAT GATGTAGAGC
  ACGTTGTCCT CAAATTCACA AAAACCTGCC AGCCTCTGCC TCAGGATGGC TGTGACTAAA
  GGCACGTACC ATTATGCCCA CCCAGCTCCT ATGCACTTTT GACAGTTGTT CTATTGAAGG
  CGCGTGAATG TTCACAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss130738364	NCBIM37_NT_039649_chr17_30140213	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108307326					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130738364	NCBIM37_NT_039649_chr17_30140213	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30222242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8934	CpG island 8934	832 bp proximal
Gm50019	predicted gene, 50019	within coordinates
Tssr143600	transcription start site region 143600	1088 bp upstream
Tssr143601	transcription start site region 143601	1212 bp upstream
Tssr143602	transcription start site region 143602	1510 bp upstream
Tssr143603	transcription start site region 143603	1585 bp upstream
Tssr143604	transcription start site region 143604	1761 bp upstream
Tssr147242	transcription start site region 147242	1352 bp downstream
Zfand3	zinc finger, AN1-type domain 3	1771 bp upstream